1c1
< netcdf roms {
---
> netcdf his_20131024 {
3,14c3,14
< 	xi_rho = 121 ;
< 	xi_u = 120 ;
< 	xi_v = 121 ;
< 	xi_psi = 120 ;
< 	eta_rho = 81 ;
< 	eta_u = 81 ;
< 	eta_v = 80 ;
< 	eta_psi = 80 ;
< 	N = 32 ;
< 	s_rho = 32 ;
< 	s_w = 33 ;
< 	tracer = 2 ;
---
> 	xi_rho = 440 ;
> 	xi_u = 439 ;
> 	xi_v = 440 ;
> 	xi_psi = 439 ;
> 	eta_rho = 320 ;
> 	eta_u = 320 ;
> 	eta_v = 319 ;
> 	eta_psi = 319 ;
> 	N = 36 ;
> 	s_rho = 36 ;
> 	s_w = 37 ;
> 	tracer = 14 ;
16,17c16
< 	ocean_time = 5 ;
< 	time = 5 ;
---
> 	ocean_time = UNLIMITED ; // (40 currently)
24d22
< 		dt:units = "second" ;
25a24
> 		dt:units = "second" ;
27d25
< 		dtfast:units = "second" ;
28a27
> 		dtfast:units = "second" ;
30d28
< 		dstart:units = "days since 1858-11-17 00:00:00" ;
31a30
> 		dstart:units = "days since 1858-11-17 00:00:00" ;
33a33,34
> 	int ndefHIS ;
> 		ndefHIS:long_name = "number of time-steps between the creation of history files" ;
37,40c38,45
< 	int ntsAVG ;
< 		ntsAVG:long_name = "starting time-step for accumulation of time-averaged fields" ;
< 	int nAVG ;
< 		nAVG:long_name = "number of time-steps between time-averaged records" ;
---
> 	int ntsDIA ;
> 		ntsDIA:long_name = "starting time-step for accumulation of diagnostic fields" ;
> 	int nDIA ;
> 		nDIA:long_name = "number of time-steps between diagnostic records" ;
> 	int ndefDIA ;
> 		ndefDIA:long_name = "number of time-steps between the creation of diagnostic files" ;
> 	int nSTA ;
> 		nSTA:long_name = "number of time-steps between stations records" ;
47,49c52,57
< 	double visc2 ;
< 		visc2:units = "meter2 second-1" ;
< 		visc2:long_name = "Laplacian mixing coefficient for momentum" ;
---
> 	double nl_tnu2(tracer) ;
> 		nl_tnu2:long_name = "nonlinear model Laplacian mixing coefficient for tracers" ;
> 		nl_tnu2:units = "meter2 second-1" ;
> 	double nl_visc2 ;
> 		nl_visc2:long_name = "nonlinear model Laplacian mixing coefficient for momentum" ;
> 		nl_visc2:units = "meter2 second-1" ;
51d58
< 		Akt_bak:units = "meter2 second-1" ;
52a60
> 		Akt_bak:units = "meter2 second-1" ;
54d61
< 		Akv_bak:units = "meter2 second-1" ;
55a63
> 		Akv_bak:units = "meter2 second-1" ;
57d64
< 		Akk_bak:units = "meter2 second-1" ;
58a66
> 		Akk_bak:units = "meter2 second-1" ;
60d67
< 		Akp_bak:units = "meter2 second-1" ;
61a69
> 		Akp_bak:units = "meter2 second-1" ;
63d70
< 		rdrg:units = "meter second-1" ;
64a72
> 		rdrg:units = "meter second-1" ;
66d73
< 		rdrg2:units = "nondimensional" ;
69d75
< 		Zob:units = "meter" ;
70a77
> 		Zob:units = "meter" ;
72d78
< 		Zos:units = "meter" ;
73a80
> 		Zos:units = "meter" ;
75d81
< 		Znudg:units = "day-1" ;
76a83
> 		Znudg:units = "day-1" ;
78d84
< 		M2nudg:units = "day-1" ;
79a86
> 		M2nudg:units = "day-1" ;
81d87
< 		M3nudg:units = "day-1" ;
82a89
> 		M3nudg:units = "day-1" ;
84d90
< 		Tnudg:units = "day-1" ;
85a92
> 		Tnudg:units = "day-1" ;
87d93
< 		FSobc_in:units = "second-1" ;
88a95
> 		FSobc_in:units = "second-1" ;
90d96
< 		FSobc_out:units = "second-1" ;
91a98
> 		FSobc_out:units = "second-1" ;
93d99
< 		M2obc_in:units = "second-1" ;
94a101
> 		M2obc_in:units = "second-1" ;
96d102
< 		M2obc_out:units = "second-1" ;
98,103c104
< 	double M3obc_in(boundary) ;
< 		M3obc_in:units = "second-1" ;
< 		M3obc_in:long_name = "3D momentum inflow, nudging inverse time scale" ;
< 	double M3obc_out(boundary) ;
< 		M3obc_out:units = "second-1" ;
< 		M3obc_out:long_name = "3D momentum outflow, nudging inverse time scale" ;
---
> 		M2obc_out:units = "second-1" ;
105d105
< 		Tobc_in:units = "second-1" ;
106a107
> 		Tobc_in:units = "second-1" ;
108d108
< 		Tobc_out:units = "second-1" ;
109a110,116
> 		Tobc_out:units = "second-1" ;
> 	double M3obc_in(boundary) ;
> 		M3obc_in:long_name = "3D momentum inflow, nudging inverse time scale" ;
> 		M3obc_in:units = "second-1" ;
> 	double M3obc_out(boundary) ;
> 		M3obc_out:long_name = "3D momentum outflow, nudging inverse time scale" ;
> 		M3obc_out:units = "second-1" ;
111d117
< 		rho0:units = "kilogram meter-3" ;
112a119
> 		rho0:units = "kilogram meter-3" ;
114,115c121,223
< 		gamma2:units = "nondimensional" ;
< 		gamma2:long_name = "Slipperiness parameter" ;
---
> 		gamma2:long_name = "slipperiness parameter" ;
> 	int LtracerSrc(tracer) ;
> 		LtracerSrc:long_name = "tracer point sources and simck activation switch" ;
> 		LtracerSrc:flag_values = 0, 1 ;
> 		LtracerSrc:flag_meanings = ".FALSE. .TRUE." ;
> 	int BioIter ;
> 		BioIter:long_name = "number of iterations to achieve convergence" ;
> 	double AttSW ;
> 		AttSW:long_name = "light attenuation by seawater" ;
> 		AttSW:units = "meter-1" ;
> 	double AttChl ;
> 		AttChl:long_name = "light attenuation by chlorophyll" ;
> 		AttChl:units = "meter-2 milligram_Chl-1" ;
> 	double PARfrac ;
> 		PARfrac:long_name = "photosynthetically available radiation fraction" ;
> 	double Vp0 ;
> 		Vp0:long_name = "Eppley temperature-limited growth parameter" ;
> 	double I_thNH4 ;
> 		I_thNH4:long_name = "radiation threshold for nitrification" ;
> 		I_thNH4:units = "watt meter-2" ;
> 	double D_p5NH4 ;
> 		D_p5NH4:long_name = "half-saturation radiation for nitrification" ;
> 		D_p5NH4:units = "watt meter-2" ;
> 	double NitriR ;
> 		NitriR:long_name = "nitrification rate" ;
> 		NitriR:units = "day-1" ;
> 	double K_NO3 ;
> 		K_NO3:long_name = "inverse half-saturation for phytoplankton NO3 uptake" ;
> 		K_NO3:units = "meter3 millimole_N-1" ;
> 	double K_NH4 ;
> 		K_NH4:long_name = "inverse half-saturation for phytoplankton NH4 uptake" ;
> 		K_NH4:units = "meter3 millimole_N-1" ;
> 	double K_Phy ;
> 		K_Phy:long_name = "zooplankton half-saturation constant for ingestion" ;
> 		K_Phy:units = "day-1" ;
> 	double Chl2C_m ;
> 		Chl2C_m:long_name = "maximum chlorophyll to carbon ratio" ;
> 		Chl2C_m:units = "milligram_chl milligram_carbon-1" ;
> 	double ChlMin ;
> 		ChlMin:long_name = "minimum chlorophyll threshold" ;
> 		ChlMin:units = "milligram_chl meter-3" ;
> 	double PhyCN ;
> 		PhyCN:long_name = "phytoplankton Carbon:Nitrogen ratio" ;
> 		PhyCN:units = "mole_C mole_N-1" ;
> 	double PhyIP ;
> 		PhyIP:long_name = "phytoplankton, NH4 inhibition parameter" ;
> 		PhyIP:units = "millimole_N-1" ;
> 	double PhyIS ;
> 		PhyIS:long_name = "phytoplankton, initial slope of P-I curve" ;
> 		PhyIS:units = "milligram_C milligram_Chl-1 watt-1 meter2 day-1" ;
> 	double PhyMin ;
> 		PhyMin:long_name = "minimum phytoplankton threshold" ;
> 		PhyMin:units = "millimole_N meter-3" ;
> 	double PhyMR ;
> 		PhyMR:long_name = "phytoplankton mortality rate" ;
> 		PhyMR:units = "day-1" ;
> 	double ZooAE_N ;
> 		ZooAE_N:long_name = "zooplankton mitrogen assimilation efficiency" ;
> 	double ZooBM ;
> 		ZooBM:long_name = "rate for zooplankton basal metabolism" ;
> 		ZooBM:units = "day-1" ;
> 	double ZooCN ;
> 		ZooCN:long_name = "zooplankton Carbon:Nitrogen ratio" ;
> 		ZooCN:units = "mole_C mole_N-1" ;
> 	double ZooER ;
> 		ZooER:long_name = "zooplankton specific excretion rate" ;
> 		ZooER:units = "day-1" ;
> 	double ZooGR ;
> 		ZooGR:long_name = "zooplankton maximum growth rate" ;
> 		ZooGR:units = "day-1" ;
> 	double ZooMin ;
> 		ZooMin:long_name = "minimum zooplankton threshold" ;
> 		ZooMin:units = "millimole_N meter-3" ;
> 	double ZooMR ;
> 		ZooMR:long_name = "zooplankton mortality rate" ;
> 		ZooMR:units = "day-1" ;
> 	double LDeRRN ;
> 		LDeRRN:long_name = "rate of large detritus nitrogen re-mineralization" ;
> 		LDeRRN:units = "day-1" ;
> 	double LDeRRC ;
> 		LDeRRC:long_name = "rate of large detritus carbon re-mineralization" ;
> 		LDeRRC:units = "day-1" ;
> 	double CoagR ;
> 		CoagR:long_name = "coagulation rate" ;
> 		CoagR:units = "day-1" ;
> 	double SDeRRN ;
> 		SDeRRN:long_name = "remineralization rate for small detritus nitrogen" ;
> 		SDeRRN:units = "day-1" ;
> 	double SDeRRC ;
> 		SDeRRC:long_name = "remineralization rate for small detritus carbon" ;
> 		SDeRRC:units = "day-1" ;
> 	double wPhy ;
> 		wPhy:long_name = "vertical sinking velocity for phytoplankton" ;
> 		wPhy:units = "meter day-1" ;
> 	double wLDet ;
> 		wLDet:long_name = "vertical sinking velocity for large detritus" ;
> 		wLDet:units = "meter day-1" ;
> 	double wSDet ;
> 		wSDet:long_name = "vertical sinking velocity for small detritus" ;
> 		wSDet:units = "meter day-1" ;
> 	double pCO2air ;
> 		pCO2air:long_name = "partial pressure of CO2 in the air" ;
> 		pCO2air:units = "parts per million by volume" ;
121d228
< 		xl:units = "meter" ;
122a230
> 		xl:units = "meter" ;
123a232
> 		el:long_name = "domain length in the ETA-direction" ;
125c234,237
< 		el:long_name = "domain length in the ETAI-direction" ;
---
> 	int Vtransform ;
> 		Vtransform:long_name = "vertical terrain-following transformation equation" ;
> 	int Vstretching ;
> 		Vstretching:long_name = "vertical terrain-following stretching function" ;
127d238
< 		theta_s:units = "nondimensional" ;
130,131c241
< 		theta_b:units = "nondimensional" ;
< 		theta_b:long_name = "S-coordinate surface control parameter" ;
---
> 		theta_b:long_name = "S-coordinate bottom control parameter" ;
133d242
< 		Tcline:units = "meter" ;
134a244
> 		Tcline:units = "meter" ;
136d245
< 		hc:units = "meter" ;
137a247,263
> 		hc:units = "meter" ;
> 	double s_rho(s_rho) ;
> 		s_rho:long_name = "S-coordinate at RHO-points" ;
> 		s_rho:valid_min = -1. ;
> 		s_rho:valid_max = 0. ;
> 		s_rho:positive = "up" ;
> 		s_rho:standard_name = "ocean_s_coordinate_g1" ;
> 		s_rho:formula_terms = "s: s_rho C: Cs_r eta: zeta depth: h depth_c: hc" ;
> 		s_rho:field = "s_rho, scalar" ;
> 	double s_w(s_w) ;
> 		s_w:long_name = "S-coordinate at W-points" ;
> 		s_w:valid_min = -1. ;
> 		s_w:valid_max = 0. ;
> 		s_w:positive = "up" ;
> 		s_w:standard_name = "ocean_s_coordinate_g1" ;
> 		s_w:formula_terms = "s: s_w C: Cs_w eta: zeta depth: h depth_c: hc" ;
> 		s_w:field = "s_w, scalar" ;
139d264
< 		Cs_r:units = "nondimensional" ;
145d269
< 		Cs_w:units = "nondimensional" ;
151d274
< 		h:units = "meter" ;
153c276,277
< 		h:coordinates = "lat_rho lon_rho" ;
---
> 		h:units = "meter" ;
> 		h:coordinates = "lon_rho lat_rho" ;
155d278
< 		h:standard_name = "sea_floor_depth" ;
157d279
< 		f:units = "second-1" ;
159c281,282
< 		f:coordinates = "lat_rho lon_rho" ;
---
> 		f:units = "second-1" ;
> 		f:coordinates = "lon_rho lat_rho" ;
162d284
< 		pm:units = "meter-1" ;
164c286,287
< 		pm:coordinates = "lat_rho lon_rho" ;
---
> 		pm:units = "meter-1" ;
> 		pm:coordinates = "lon_rho lat_rho" ;
167d289
< 		pn:units = "meter-1" ;
169c291,292
< 		pn:coordinates = "lat_rho lon_rho" ;
---
> 		pn:units = "meter-1" ;
> 		pn:coordinates = "lon_rho lat_rho" ;
171,194d293
< 	double angle(eta_rho, xi_rho) ;
< 		angle:units = "radians" ;
< 		angle:long_name = "angle between XI-axis and EAST" ;
< 		angle:coordinates = "lat_rho lon_rho " ;
< 		angle:field = "angle, scalar" ;
< 	double s_rho(s_rho) ;
< 		s_rho:units = "nondimensional" ;
< 		s_rho:long_name = "S-coordinate at RHO-points" ;
< 		s_rho:valid_min = -1. ;
< 		s_rho:valid_max = 0. ;
< 		s_rho:positive = "up" ;
< 		s_rho:standard_name = "ocean_s_coordinate_g2" ;
< 		s_rho:formula_terms = "s: s_rho C: Cs_r eta: zeta depth: h depth_c: hc" ;
< 		s_rho:field = "s_rho, scalar" ;
< 		s_rho:CoordinateTransformType = "Vertical" ;
< 		s_rho:CoordinateAxisType = "GeoZ" ;
< 		s_rho:CoordinateZisPositive = "up" ;
< 		s_rho:CoordinateAxes = "s_rho" ;
< 	double s_w(s_w) ;
< 		s_w:units = "nondimensional" ;
< 		s_w:long_name = "S-coordinate at W-points" ;
< 		s_w:valid_min = -1. ;
< 		s_w:valid_max = 0. ;
< 		s_w:field = "s_w, scalar" ;
196d294
< 		lon_rho:units = "degree-east" ;
197a296
> 		lon_rho:units = "degree_east" ;
200d298
< 		lon_rho:CoordinateAxisType = "Lon" ;
202d299
< 		lat_rho:units = "degree-north" ;
203a301
> 		lat_rho:units = "degree_north" ;
206d303
< 		lat_rho:CoordinateAxisType = "Lat" ;
208d304
< 		lon_u:units = "degrees_east" ;
209a306
> 		lon_u:units = "degree_east" ;
212d308
< 		lon_u:CoordinateAxisType = "Lon" ;
214d309
< 		lat_u:units = "degrees_north" ;
215a311
> 		lat_u:units = "degree_north" ;
218d313
< 		lat_u:CoordinateAxisType = "Lat" ;
220d314
< 		lon_v:units = "degrees_east" ;
221a316
> 		lon_v:units = "degree_east" ;
224d318
< 		lon_v:CoordinateAxisType = "Lon" ;
226d319
< 		lat_v:units = "degrees_north" ;
227a321
> 		lat_v:units = "degree_north" ;
230d323
< 		lat_v:CoordinateAxisType = "Lat" ;
232d324
< 		lon_psi:units = "degrees_east" ;
233a326
> 		lon_psi:units = "degree_east" ;
236d328
< 		lon_psi:CoordinateAxisType = "Lon" ;
238d329
< 		lat_psi:units = "degrees_north" ;
239a331
> 		lat_psi:units = "degree_north" ;
242c334,338
< 		lat_psi:CoordinateAxisType = "Lat" ;
---
> 	double angle(eta_rho, xi_rho) ;
> 		angle:long_name = "angle between XI-axis and EAST" ;
> 		angle:units = "radians" ;
> 		angle:coordinates = "lon_rho lat_rho" ;
> 		angle:field = "angle, scalar" ;
245c341
< 		mask_rho:flag_values = "0.0, 1.0" ;
---
> 		mask_rho:flag_values = 0., 1. ;
247c343
< 		mask_rho:coordinates = "lat_rho lon_rho " ;
---
> 		mask_rho:coordinates = "lon_rho lat_rho" ;
250c346
< 		mask_u:flag_values = "0.0, 1.0" ;
---
> 		mask_u:flag_values = 0., 1. ;
252c348
< 		mask_u:coordinates = "lat_u lon_u " ;
---
> 		mask_u:coordinates = "lon_u lat_u" ;
255c351
< 		mask_v:flag_values = "0.0, 1.0" ;
---
> 		mask_v:flag_values = 0., 1. ;
257c353
< 		mask_v:coordinates = "lat_v lon_v " ;
---
> 		mask_v:coordinates = "lon_v lat_v" ;
260c356
< 		mask_psi:flag_values = "0.0, 1.0" ;
---
> 		mask_psi:flag_values = 0., 1. ;
262c358
< 		mask_psi:coordinates = "lat_psi lon_psi " ;
---
> 		mask_psi:coordinates = "lon_psi lat_psi" ;
264d359
< 		ocean_time:units = "seconds since 1858-11-17 00:00:00" ;
265a361
> 		ocean_time:units = "seconds since 1858-11-17 00:00:00" ;
268,275c364
< 		ocean_time:CoordinateAxisType = "Time" ;
< 	double time(time) ;
< 		time:units = "days since 2010-12-01T00:00:00Z" ;
< 		time:long_name = "Forecast time for ForecastModelRunCollection" ;
< 		time:standard_name = "time" ;
< 		time:CoordinateAxisType = "Time" ;
< 	float zeta(time, eta_rho, xi_rho) ;
< 		zeta:units = "meter" ;
---
> 	float zeta(ocean_time, eta_rho, xi_rho) ;
276a366
> 		zeta:units = "meter" ;
277a368
> 		zeta:coordinates = "lon_rho lat_rho ocean_time" ;
279,283c370,371
< 		zeta:coordinates = "time_run time lat_rho lon_rho" ;
< 		zeta:missing_value = -9999. ;
< 		zeta:standard_name = "sea_surface_height" ;
< 	float ubar(time, eta_u, xi_u) ;
< 		ubar:units = "meter second-1" ;
---
> 		zeta:_FillValue = 1.e+37f ;
> 	float ubar(ocean_time, eta_u, xi_u) ;
284a373
> 		ubar:units = "meter second-1" ;
285a375
> 		ubar:coordinates = "lon_u lat_u ocean_time" ;
287,291c377,378
< 		ubar:coordinates = "time_run time lat_u lon_u" ;
< 		ubar:missing_value = -9999. ;
< 		ubar:standard_name = "northward_sea_water_vertically_integrated_velocity_assuming_no_tide" ;
< 	float vbar(time, eta_v, xi_v) ;
< 		vbar:units = "meter second-1" ;
---
> 		ubar:_FillValue = 1.e+37f ;
> 	float vbar(ocean_time, eta_v, xi_v) ;
292a380
> 		vbar:units = "meter second-1" ;
293a382
> 		vbar:coordinates = "lon_v lat_v ocean_time" ;
295,298c384,385
< 		vbar:coordinates = "time_run time lat_v lon_v" ;
< 		vbar:missing_value = -9999. ;
< 	float u(time, s_rho, eta_u, xi_u) ;
< 		u:units = "meter second-1" ;
---
> 		vbar:_FillValue = 1.e+37f ;
> 	float u(ocean_time, s_rho, eta_u, xi_u) ;
299a387
> 		u:units = "meter second-1" ;
300a389
> 		u:coordinates = "lon_u lat_u s_rho ocean_time" ;
302,306c391,392
< 		u:coordinates = "time_run time s_rho lat_u lon_u" ;
< 		u:missing_value = -9999. ;
< 		u:standard_name = "eastward_sea_water_velocity_assuming_no_tide" ;
< 	float v(time, s_rho, eta_v, xi_v) ;
< 		v:units = "meter second-1" ;
---
> 		u:_FillValue = 1.e+37f ;
> 	float v(ocean_time, s_rho, eta_v, xi_v) ;
307a394
> 		v:units = "meter second-1" ;
308a396
> 		v:coordinates = "lon_v lat_v s_rho ocean_time" ;
310,314c398,399
< 		v:coordinates = "time_run time s_rho lat_v lon_v" ;
< 		v:missing_value = -9999. ;
< 		v:standard_name = "northward_sea_water_velocity_assuming_no_tide" ;
< 	float w(time, s_w, eta_rho, xi_rho) ;
< 		w:units = "meter second-1" ;
---
> 		v:_FillValue = 1.e+37f ;
> 	float w(ocean_time, s_w, eta_rho, xi_rho) ;
315a401
> 		w:units = "meter second-1" ;
316a403
> 		w:coordinates = "lon_rho lat_rho s_w ocean_time" ;
318,322c405,406
< 		w:coordinates = "time_run time s_w lat_rho lon_rho" ;
< 		w:missing_value = -9999. ;
< 		w:standard_name = "upward_sea_water_velocity_assuming_no_tide" ;
< 	float temp(time, s_rho, eta_rho, xi_rho) ;
< 		temp:units = "Celsius" ;
---
> 		w:_FillValue = 1.e+37f ;
> 	float temp(ocean_time, s_rho, eta_rho, xi_rho) ;
323a408
> 		temp:units = "Celsius" ;
324a410
> 		temp:coordinates = "lon_rho lat_rho s_rho ocean_time" ;
326,330c412,413
< 		temp:coordinates = "time_run time s_rho lat_rho lon_rho" ;
< 		temp:missing_value = -9999. ;
< 		temp:standard_name = "sea_water_potential_temperature" ;
< 	float salt(time, s_rho, eta_rho, xi_rho) ;
< 		salt:units = "PSU" ;
---
> 		temp:_FillValue = 1.e+37f ;
> 	float salt(ocean_time, s_rho, eta_rho, xi_rho) ;
332a416
> 		salt:coordinates = "lon_rho lat_rho s_rho ocean_time" ;
334,336c418,453
< 		salt:coordinates = "time_run time s_rho lat_rho lon_rho" ;
< 		salt:missing_value = -9999. ;
< 		salt:standard_name = "sea_water_salinity" ;
---
> 		salt:_FillValue = 1.e+37f ;
> 	float NO3(ocean_time, s_rho, eta_rho, xi_rho) ;
> 		NO3:long_name = "nitrate concentration" ;
> 		NO3:units = "millimole_N03 meter-3" ;
> 		NO3:time = "ocean_time" ;
> 		NO3:coordinates = "lon_rho lat_rho s_rho ocean_time" ;
> 		NO3:field = "NO3, scalar, series" ;
> 		NO3:_FillValue = 1.e+37f ;
> 	float NH4(ocean_time, s_rho, eta_rho, xi_rho) ;
> 		NH4:long_name = "ammonium concentration" ;
> 		NH4:units = "millimole_NH4 meter-3" ;
> 		NH4:time = "ocean_time" ;
> 		NH4:coordinates = "lon_rho lat_rho s_rho ocean_time" ;
> 		NH4:field = "NH4, scalar, series" ;
> 		NH4:_FillValue = 1.e+37f ;
> 	float chlorophyll(ocean_time, s_rho, eta_rho, xi_rho) ;
> 		chlorophyll:long_name = "chlorophyll concentration" ;
> 		chlorophyll:units = "milligrams_chlorophyll meter-3" ;
> 		chlorophyll:time = "ocean_time" ;
> 		chlorophyll:coordinates = "lon_rho lat_rho s_rho ocean_time" ;
> 		chlorophyll:field = "chlorophyll, scalar, series" ;
> 		chlorophyll:_FillValue = 1.e+37f ;
> 	float phytoplankton(ocean_time, s_rho, eta_rho, xi_rho) ;
> 		phytoplankton:long_name = "phytoplankton concentration" ;
> 		phytoplankton:units = "millimole_nitrogen meter-3" ;
> 		phytoplankton:time = "ocean_time" ;
> 		phytoplankton:coordinates = "lon_rho lat_rho s_rho ocean_time" ;
> 		phytoplankton:field = "phytoplankton, scalar, series" ;
> 		phytoplankton:_FillValue = 1.e+37f ;
> 	float zooplankton(ocean_time, s_rho, eta_rho, xi_rho) ;
> 		zooplankton:long_name = "zooplankton concentration" ;
> 		zooplankton:units = "millimole_nitrogen meter-3" ;
> 		zooplankton:time = "ocean_time" ;
> 		zooplankton:coordinates = "lon_rho lat_rho s_rho ocean_time" ;
> 		zooplankton:field = "zooplankton, scalar, series" ;
> 		zooplankton:_FillValue = 1.e+37f ;
338a456
> 		:file = "/gpfs_share/omg/autosabgom/out/his_20131024_0002.nc" ;
340c458
< 		:Conventions = "CF-1.4, _Coordinates" ;
---
> 		:Conventions = "CF-1.0" ;
342,369c460,489
< 		:title = "ROMS/TOMS 3.0 - New Floria Shelf Application" ;
< 		:grd_file = "/usr2/Operational/Common/WFSbath_merged.nc" ;
< 		:ini_file = "../IC/IC.nc" ;
< 		:frc_file_01 = "/usr2/Operational/Common/river_clim.nc" ;
< 		:frc_file_02 = "../Atmo/oi_sst.nc" ;
< 		:frc_file_03 = "../Atmo/atm.nc" ;
< 		:clm_file = "../Ogcm/nest.nc" ;
< 		:geospatial_lat_min = 24.2711 ;
< 		:geospatial_lat_max = 30.8158 ;
< 		:geospatial_lon_min = -90.5187 ;
< 		:geospatial_lon_max = -80.397 ;
< 		:geospatial_vertical_min = -1. ;
< 		:geospatial_vertical_max = 0. ;
< 		:geospatial_vertical_positive = "up" ;
< 		:geospatial_lat_units = "degrees_north" ;
< 		:geospatial_lon_units = "degrees_east" ;
< 		:geospatial_vertical_units = "ocean_s_coordinate_g2" ;
< 		:time_coverage_resolution = "PT24H" ;
< 		:creator_email = "lzheng@marine.usf.edu" ;
< 		:creator_name = "Lianyuan Zheng" ;
< 		:institution = "University of South Florida" ;
< 		:project = "West Florida Shelf Nowcast/Forecast System" ;
< 		:contributor_name = "Dr. Bob Weisberg" ;
< 		:publisher_email = "weisberg@marine.usf.edu" ;
< 		:publisher_name = "College of Marine Science, University of South Florida" ;
< 		:publisher_url = "http://ocgweb.marine.usf.edu" ;
< 		:license = "The data can be used for the research, but not for legal use." ;
< 		:CPP_options = "ANA_BSFLUX, ANA_BTFLUX, ASSUMED_SHAPE, AVERAGES, BULK_FLUXES, CURVGRID, DJ_GRADPS, DOUBLE_PRECISION, EASTERN_WALL, FLOATS, KANTHA_CLAYSON, M2CLIMATOLOGY, M2CLM_NUDGING, M3CLIMATOLOGY, M3CLM_NUDGING, MASKING, MIX_S_UV, MY25_MIXING, NONLIN_EOS, NORTHERN_WALL, N2S2_HORAVG, OBC_VOLCONS, _OPENMP, POWER_LAW, PROFILE, QCORRECTION, K_GSCHEME, !RST_SINGLE, SALINITY, SOLAR_SOURCE, SOLVE3D, SOUTH_FSCHAPMAN, SOUTH_M2FLATHER, SOUTH_M3NUDGING, SOUTH_M3RADIATION, SOUTH_KRADIATION, SOUTH_TNUDGING, SOUTH_TRADIATION, SPLINES, TCLIMATOLOGY, TCLM_NUDGING, TS_U3HADVECTION, TS_SVADVECTION, TS_PSOURCE, UV_ADV, UV_COR, UV_U3HADVECTION, UV_SADVECTION, UV_PSOURCE, UV_VIS2, VAR_RHO_2D, WFS, WESTERN_WALL" ;
---
> 		:title = "ROMS/TOMS 3.0 - South-Atlantic Bight and Gulf of Mexico" ;
> 		:rst_file = "/gpfs_share/omg/autosabgom/out/rst_20131024.nc" ;
> 		:his_base = "/gpfs_share/omg/autosabgom/out/his_20131024" ;
> 		:dia_file = "/gpfs_share/omg/autosabgom/out/dia_20131024.nc" ;
> 		:sta_file = "/gpfs_share/omg/autosabgom/out/sta_20131024.nc" ;
> 		:grd_file = "/he_data/he/omg/autosabgom/in/sabgom_grd.nc.Etopo2.LP.r1_5.filled" ;
> 		:ini_file = "/he_data/he/omg/autosabgom/in/ncoda_ini_20131017.nc" ;
> 		:frc_file_01 = "/he_data/he/omg/autosabgom/in/nomads_frc_20131024.nc" ;
> 		:frc_file_02 = "/he_data/he/omg/autosabgom/in/SABGOM.OTIS.Ref18581117.8Cons" ;
> 		:frc_file_03 = "/he_data/he/omg/autosabgom/in/sabgom_river_79_clm_2003_2010.nc" ;
> 		:bry_file = "/he_data/he/omg/autosabgom/in/ncoda_bry_20131024.nc" ;
> 		:clm_file = "/he_data/he/omg/autosabgom/in/ncoda_clm_20131024.nc" ;
> 		:script_file = "/home/omg/autosabgom/sabgom_20131024.in" ;
> 		:bpar_file = "/home/omg/autosabgom/bioFasham_038_Katja.in.U3C4" ;
> 		:spos_file = "/home/omg/autosabgom/stations.in" ;
> 		:svn_url = "https://www.myroms.org/svn/omlab/branches/jcwarner" ;
> 		:svn_rev = "412M" ;
> 		:code_dir = "/he_data/he/zxue/COAWST411" ;
> 		:header_dir = "/he_data/he/zxue/Projects/SABGOM_BIO" ;
> 		:header_file = "mch_bio_nf.h" ;
> 		:os = "Linux" ;
> 		:cpu = "x86_64" ;
> 		:compiler_system = "pgi" ;
> 		:compiler_command = "/usr/local/apps/mpich/x86_64/pgi105/mx127..7/bin/mpif90" ;
> 		:compiler_flags = "-fastsse   -Kieee -fastsse -Mipa=fast -tp k8-64 -Mfree" ;
> 		:tiling = "008x004" ;
> 		:history = "ROMS/TOMS, Version 3.4, Thursday - October 24, 2013 -  1:50:52 AM" ;
> 		:ana_file = "ROMS/Functionals/ana_btflux.h, ROMS/Functionals/ana_nudgcoef.h, ROMS/Functionals/ana_stflux.h" ;
> 		:bio_file = "ROMS/Nonlinear/Biology/fennel.h" ;
> 		:CPP_options = "SABGOM, ADD_FSOBC, ADD_M2OBC, ANA_BPFLUX, ANA_BSFLUX, ANA_BTFLUX, ANA_SPFLUX, ASSUMED_SHAPE, BIO_FENNEL, BIO_SEDIMENT, BULK_FLUXES, CARBON, CURVGRID, DENITRIFICATION, DIAGNOSTICS_BIO, DJ_GRADPS, DOUBLE_PRECISION, EAST_FSCHAPMAN, EAST_M2FLATHER, EAST_M3NUDGING, EAST_M3RADIATION, EAST_TNUDGING, EAST_TRADIATION, EMINUSP, KANTHA_CLAYSON, MASKING, MIX_GEO_TS, MIX_S_UV, MPI, MY25_MIXING, NONLINEAR, NONLIN_EOS, NORTHERN_WALL, N2S2_HORAVG, !OCMIP_OXYGEN_SC, OXYGEN, POWER_LAW, PROFILE, K_GSCHEME, RADIATION_2D, RAMP_TIDES, !RST_SINGLE, SALINITY, SOLAR_SOURCE, SOLVE3D, SOUTH_FSCHAPMAN, SOUTH_M2FLATHER, SOUTH_M3NUDGING, SOUTH_M3RADIATION, SOUTH_TNUDGING, SOUTH_TRADIATION, SPLINES, SSH_TIDES, STATIONS, !TALK_PROGNOSTIC, TCLIMATOLOGY, TCLM_NUDGING, TS_U3HADVECTION, TS_C4VADVECTION, TS_DIF2, TS_PSOURCE, UV_ADV, UV_COR, UV_U3HADVECTION, UV_C4VADVECTION, UV_QDRAG, UV_PSOURCE, UV_TIDES, UV_VIS2, VAR_RHO_2D, WESTERN_WALL" ;